Metadynamics and the immune system and origin of life

Research publications

R. J. Bagley, J. D. Farmer and W. Fontana, “Evolution of a Metabolism”, In Artificial Life II, eds. C. Langton, C. Taylor, J. D. Farmer and S. Rasmussen, 141-158. Santa Fe Institute Studies in the Sciences of Complexity, Redwood City, CA: Addison Wesley, 1991. (book chapter)
R. J. Bagley and J. D. Farmer, “Spontaneous Emergence of a Metabolism”, In Artificial Life II, eds. C. Langton, C. Taylor, J. D. Farmer, and S. Rasmussen, proc. 93-140. Santa Fe Institute Studies in the Sciences of Complexity. Redwood City, CA: Addison Wesley, 1991. (book chapter)

J. Doyne Farmer, “A Rosetta Stone For Connectionism”, Physica D 42(1-3) (1990): 153-187. (research paper)

R. J. Bagley, J. D. Farmer, S. A. Kauffman, N. H. Packard, A. S. Perelson and I. M. Stadnyk, “Modeling Adaptive Biological Systems”, Biosystems 23 (1989): 113-138. (research paper)

J. D Farmer, S. Kauffman, N. Packard, and A. Perelson, “Adaptive Dynamic Networks as Models for the Immune System and Autocatalytic Sets”, Perspectives in Biological Dynamics and Theoretical Medicine Ann. NY Acad. Sci. 504 (1987): 118-131. (research paper)

J. D. Farmer, S. Kauffman and N. H. Packard, “Autocatalytic Replication of Polymers”, Physica D 22(1-3) (1986): 50-67. (research paper)
J. D. Farmer, N. H. Packard and A. Perelson, “The Immune System, Adaptation, and Machine Learning”, Physica D 22(1-3) (1986): 187-204. (research paper)

C. Burks and J. D. Farmer, “Towards Modeling DNA Sequences as Automata”, Physica D 10(1-2) (1984): 157-167. (research paper)